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Microbiology during covid19

Submitted by sat on 22 May 2020

Updated 27 February 2023

GOOD HYGIENE DURING COVID-19

Good hygiene should be strictly observed such as is stated in the Australian Health Protection Principal Committee (AHPPC) statements, see https://www.health.gov.au/committees-and-groups/australian-health-protection-principal-committee-ahppc   

In particular, see the sections on hygiene, routine care and environmental cleaning. The general hygiene advice is:

Safe Work Australia also has a wealth of good information related to the education and training sector, see https://covid19.swa.gov.au/covid-19-information-workplaces/industry-information/education-and-training

The Australian Health Protection Principal Committee (AHPPC) has advice for schools including the following:

Schools should implement a range of other strategies to reduce transmission, including the promotion of personal hygiene measures (frequent handwashing, reducing face-to-face contact, cough etiquette), physical distancing, reducing public gatherings (e.g., face-to-face school assemblies), and reducing the mixing of students (e.g., reduced use of common areas, staggered lunchtimes, and reduced after-school activities and inter-school activities).1

Updates from the Australian Government Department of Health for general information regarding COVID-19 can be found at https://www.health.gov.au/health-alerts/covid-19

For the Latest statements from the Australian Health Protection Principal Committee (AHPPC) on coronavirus (COVID-19), see https://www.health.gov.au/committees-and-groups/australian-health-protection-principal-committee-ahppc 

It is important to take into consideration that some staff and/or students may be at higher risk of serious infection from the coronavirus disease including those that have compromised immune systems and staff members over 60 years of age.

Schools work at a frenetic pace, but time should be allocated to ensure particular attention is given to the advice provided by the Australian Government Department of Health.

This involves following guidance by the Department of Health encouraging the adherence by staff and students to maintain good hygiene and social distancing, including but not limited to:

SCHOOL SCIENCE ACTIVITIES AND COVID-19

School science activities have additional aspects to consider such as the use of shared safety glasses, (and shared microscopes), unpredictable student behaviour and students working in close proximity to collaborate on activities. Schools should have strategies to address these aspects in particular:

Schools should assess their ability to adequately manage each of the above and if it is not possible to meet these requirements then schools should err on the side of caution and not proceed with a particular activity as a student activity.

It may be better in these circumstances to conduct a demonstration, so that good hygiene and social distancing can be maintained.

USING MICROSCOPES DURING COVID-19

Microscopes should be cleaned and disinfected in between use. See the information regarding Microscope cleaning and disinfection in our question Purchasing and maintaining microscopes

MICROBIOLOGY DURING COVID-19

A site specific biological risk assessment should be conducted for all microbiological work as recommended in the Science ASSIST GUIDELINES for best practice for microbiology in Australian schools.

Viruses and their cultivation in the laboratory

There is no risk of the coronavirus growing on agar plates as it will not grow on bacteria and will not be propagated on the agar.

Viruses are unable to be grown on agar plates or in microbiological broths as viruses require a living host cell such as plant or animal cells in order to replicate. Specific cell culture systems or the use of embryonated eggs would normally be required. The exception is Bacteriophages that infect bacteria. These can be grown with bacteria on special agar plates; however, these are not used in schools (Megan Lloyd, personal communication, 2020. Chair of the Education Special Interest Group of the Australian Society for Microbiology).3, 4, 5

Wearing masks

Masks are not required if you are well and working with standard microbiological procedures, see:

General note: Staff and students should not be at school if they are unwell, so there is no need to wear masks. If disposable masks are used, they must not be reused and must be removed and disposed of properly to avoid increasing risks of infection.

Wearing safety glasses

Safety glasses should be used when conducting microbiological activities including preparing microscope slides to protect from biological splashes and aerosols. They are not required for viewing prepared slides under a microscope, as they may also introduce new risks such as additional face touching.

Shared safety glasses should be cleaned/disinfected between users, see the Science ASSIST Q&As on this topic: Should shared safety glasses be decontaminated after each use? And safety glasses and assessing risks

Wearing gloves

Gloves are not a substitute for frequent handwashing and can pose a higher risk of spreading disease if not used correctly. See https://covid19.swa.gov.au/covid-19-information-workplaces/industry-information/general-industry-information/hygiene

They are not required for standard microbiological procedures unless a person has cuts or other skin problems such as dermatitis.

In the current COVID-19 situation we recommend that gloves are worn if your school chooses to conduct environmental sampling to further minimize risks of infection, see below the section on Environmental sampling.1

Note: gloves are not appropriate if using Bunsen burners.

Environmental sampling

Environmental sampling poses an additional risk during this pandemic, due to the possible presence of the coronavirus on surfaces that are being sampled. I.e., touching something that someone has touched who has the virus.

Therefore, we recommend that gloves be worn by staff/students who are sampling from different environmental surfaces4 and the observation of strict safe procedures:

Note: Schools have increased their cleaning regime and there may not be many microbes present, however wearing gloves has the additional benefits of

Standard microbiological precautions appl,. i.e.

Note that these agar plates should never be opened or subcultured as they will contain unknown wild microorganisms some of which may be pathogenic.

For more information on this activity, see the ‘SOP: Microbes are everywhere’ contained in Attachment 1 in the GUIDELINES for best practice for microbiology in Australian schools.

Standard precautions apply as below.

The growth and subculture of pure cultures of microorganisms

Standard microbiological practice should be followed:

Aseptic techniques should be used to avoid generating microbial aerosols which can contaminate agar plates, students or staff, work surfaces and the environment These include:

Note: There must be no opening and no subculturing from plates or broths inoculated by students.

Other school requirements:

For more detailed information of microbiology practices, see GUIDELINES for best practice for microbiology in Australian schools.

REFERENCES

1 Australian Government Department of Health and Aged Care. (2020, March 17). Australian Health Protection Principal Committee (AHPPC) coronavirus (COVID-19) statement on 17 March 2020. Retrieved from Australian Government Department of Health and Aged Care: https://www.health.gov.au/news/australian-health-protection-principal-committee-ahppc-coronavirus-covid-19-statement-on-17-march-2020-0

2 Australian Government Department of Health and Aged Care. (2022, December 7).  Protect yourself and others from COVID-19 - Hygiene. Retrieved from Australian Government Department of Health and Aged Care: https://www.health.gov.au/topics/covid-19/protect-yourself-and-others

3 Course Hero, Inc. (2023). Microbiology Acellular Pathogens – Isolation, Culture, and Identification of Viruses. Retrieved from Course Hero: https://www.coursehero.com/study-guides/microbiology/isolation-culture-and-identification-of-viruses/ 

4 LabTech Training. (n.d.). Personal Study: Virus Culture. Retrieved from Simulab Testing Laboratory: http://simulab.ltt.com.au/4/laboratory/personalstudy/psVirusCulture.htm

5 Course Hero, Inc. (2023). Microbiology, Viral Cultivation and Physiology. Retrieved from CliffsNotes: https://www.cliffsnotes.com/study-guides/biology/microbiology/the-viruses/viral-cultivation-and-physiology

Australian Government Department of Health and Aged Care. (2022, November 25). Coronavirus (COVID-19) pandemic. Retrieved from Australian Government Department of Health and Aged Care: https://www.health.gov.au/health-alerts/covid-19

Australian Government Department of Health and Aged Care. (2022, December 9). COVID-19 disease and symptoms – How COVID-19 spreads. Retrieved from Australian Government Department of Health and Aged Care: https://www.health.gov.au/topics/covid-19/about?language=und

Australian Government Department of Health and Aged Care. (2023, February 1). Australian Health Protection Principal Committee (AHPPC). Retrieved from Australian Government Department of Health and Aged Care: https://www.health.gov.au/committees-and-groups/australian-health-protection-principal-committee-ahppc

Australian Science Teachers’ Association. (2023). Policy positions – Our position on Safe Practical Activities in School Science. Retrieved from Australian Science Teachers’ Association: https://asta.edu.au/impact-and-advocacy/policy-positions/. Pdf: https://asta.edu.au/wp-content/uploads/2021/10/ASTA-Position-Statement-on-safe-practical-activities-in-school-science.pdf

Healthdirect. (n.d.). How to avoid COVID-19 – Wearing a mask. Retrieved from healthdirect: https://www.healthdirect.gov.au/covid-19/how-to-avoid-covid-19#mask

safe work australia. (2020, April 29). Retail, supermarkets and shopping centres – Gloves. Retrieved from safe work australia: https://covid19.swa.gov.au/covid-19-information-workplaces/industry-information/retail-supermarkets-and-shopping-centres-11

safe work australia. (2022, May 25). COVID-19 Information for workplaces. Retrieved from safe work australia: https://covid19.swa.gov.au/covid-19-information-workplaces Note: this page has several links to related information and state-based information advice)

Science ASSIST. (2016). GUIDELINES for best practice for microbiology in Australian schools. Retrieved from Science ASSIST: https://assist.asta.edu.au/resource/4196/guidelines-best-practice-microbiology-australian-schools

Science ASSIST. (2020, May 21). Purchasing and maintaining microscopes – Microscope cleaning and disinfection. Retrieved from Science ASSIST: https://assist.asta.edu.au/question/4582/purchasing-and-maintaining-microscopes

Science ASSIST. (2022, December 21). Safety glasses and shared use. Retrieved from Science ASSIST: https://assist.asta.edu.au/question/4552/safety-glasses-and-shared-use  

Microbiology during COVID-19

Submitted by on 26 May 2020

Great responses! Thank you.